J5_4W29_012

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4W29|1|DA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4W29_012 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1996

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4W29|1|DA|C|47
4W29|1|DA|G|48
4W29|1|DA|A|49
4W29|1|DA|U|50
4W29|1|DA|G|51
4W29|1|DA|A|52
4W29|1|DA|A|53
4W29|1|DA|G|54
*
4W29|1|DA|C|116
4W29|1|DA|G|117
4W29|1|DA|A|118
4W29|1|DA|A|119
4W29|1|DA|U|120
4W29|1|DA|G|121
*
4W29|1|DA|C|130
4W29|1|DA|G|131
*
4W29|1|DA|C|148
4W29|1|DA|A|149
4W29|1|DA|C|150
*
4W29|1|DA|G|176
4W29|1|DA|G|177
4W29|1|DA|G|178

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D7

50S ribosomal protein L34

Chain DX

50S ribosomal protein L23