J5_4W29_015

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GCGACUC*GGAC*GUUC*GC*GCGAAUGC

Length

25 nucleotides

Bulged bases

4W29|1|DA|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W29|1|DA|G|583
4W29|1|DA|C|584
4W29|1|DA|G|585
4W29|1|DA|A|586
4W29|1|DA|C|587
4W29|1|DA|U|588
4W29|1|DA|C|589
*
4W29|1|DA|G|668
4W29|1|DA|G|669
4W29|1|DA|A|670
4W29|1|DA|C|671
*
4W29|1|DA|G|809
4W29|1|DA|U|810
4W29|1|DA|U|811
4W29|1|DA|C|812
*
4W29|1|DA|G|1195
4W29|1|DA|C|1196
*
4W29|1|DA|G|1250
4W29|1|DA|C|1251
4W29|1|DA|G|1252
4W29|1|DA|A|1253
4W29|1|DA|A|1254
4W29|1|DA|U|1255
4W29|1|DA|G|1256
4W29|1|DA|C|1257

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D8

50S ribosomal protein L35

Chain DF

50S ribosomal protein L4

Chain DP

50S ribosomal protein L15

Chain DU

50S ribosomal protein L20

Chain DV

50S ribosomal protein L21