J5_4W29_016

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

AGGAACUCUGCAAGUUGG*UG*CC*GUGAACAGG*CGCUGUCU

Length

39 nucleotides

Bulged bases

4W29|1|DA|G|1758

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W29|1|DA|A|1665
4W29|1|DA|G|1666
4W29|1|DA|G|1667
4W29|1|DA|A|1668
4W29|1|DA|A|1669
4W29|1|DA|C|1670
4W29|1|DA|U|1671
4W29|1|DA|C|1672
4W29|1|DA|U|1673
4W29|1|DA|G|1674
4W29|1|DA|C|1675
4W29|1|DA|A|1676
4W29|1|DA|A|1677
4W29|1|DA|G|1678
4W29|1|DA|U|1679
4W29|1|DA|U|1680
4W29|1|DA|G|1681
4W29|1|DA|G|1682
*
4W29|1|DA|U|1706
4W29|1|DA|G|1707
*
4W29|1|DA|C|1751
4W29|1|DA|C|1752
*
4W29|1|DA|G|1756
4W29|1|DA|U|1757
4W29|1|DA|G|1758
4W29|1|DA|A|1759
4W29|1|DA|A|1760
4W29|1|DA|C|1761
4W29|1|DA|A|1762
4W29|1|DA|G|1763
4W29|1|DA|G|1764
*
4W29|1|DA|C|1988
4W29|1|DA|G|1989
4W29|1|DA|C|1990
4W29|1|DA|U|1991
4W29|1|DA|G|1992
4W29|1|DA|U|1993
4W29|1|DA|C|1994
4W29|1|DA|U|1995

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain DE

50S ribosomal protein L3

Chain DO

50S ribosomal protein L14

Chain DT

50S ribosomal protein L19