J5_4W2E_009
3D structure
- PDB id
- 4W2E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4W2E_009 not in the Motif Atlas
- Homologous match to J5_4LFB_001
- Geometric discrepancy: 0.0759
- The information below is about J5_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_70703.1
- Basepair signature
- cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
4W2E|1|a|C|36
4W2E|1|a|U|37
4W2E|1|a|G|38
4W2E|1|a|G|39
*
4W2E|1|a|C|403
4W2E|1|a|U|404
4W2E|1|a|U|405
4W2E|1|a|G|406
*
4W2E|1|a|C|436
4W2E|1|a|U|437
4W2E|1|a|G|438
4W2E|1|a|A|439
4W2E|1|a|A|441
4W2E|1|a|C|442
*
4W2E|1|a|G|492
4W2E|1|a|G|493
4W2E|1|a|U|494
4W2E|1|a|A|495
4W2E|1|a|A|496
4W2E|1|a|U|498
4W2E|1|a|A|499
4W2E|1|a|G|500
*
4W2E|1|a|C|545
4W2E|1|a|G|546
4W2E|1|a|A|547
4W2E|1|a|G|548
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain d
- 30S ribosomal protein S4
- Chain l
- 30S ribosomal protein S12
- Chain y
- 50S ribosomal protein L9, Elongation factor 4
Coloring options: