J5_4W2F_001

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4W2F_001 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0675

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4W2F|1|AA|C|36
4W2F|1|AA|U|37
4W2F|1|AA|G|38
4W2F|1|AA|G|39
*
4W2F|1|AA|C|403
4W2F|1|AA|U|404
4W2F|1|AA|U|405
4W2F|1|AA|G|406
*
4W2F|1|AA|C|436
4W2F|1|AA|U|437
4W2F|1|AA|G|438
4W2F|1|AA|A|439
4W2F|1|AA|A|441
4W2F|1|AA|C|442
*
4W2F|1|AA|G|492
4W2F|1|AA|G|493
4W2F|1|AA|U|494
4W2F|1|AA|A|495
4W2F|1|AA|A|496
4W2F|1|AA|U|498
4W2F|1|AA|A|499
4W2F|1|AA|G|500
*
4W2F|1|AA|C|545
4W2F|1|AA|G|546
4W2F|1|AA|A|547
4W2F|1|AA|G|548

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AD

30S Ribosomal Protein S4

Chain AL

30S Ribosomal Protein S12