J5_4W2F_012

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4W2F|1|DA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4W2F_012 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0594

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4W2F|1|DA|C|47
4W2F|1|DA|G|48
4W2F|1|DA|A|49
4W2F|1|DA|U|50
4W2F|1|DA|G|51
4W2F|1|DA|A|52
4W2F|1|DA|A|53
4W2F|1|DA|G|54
*
4W2F|1|DA|C|116
4W2F|1|DA|G|117
4W2F|1|DA|A|118
4W2F|1|DA|A|119
4W2F|1|DA|U|120
4W2F|1|DA|G|121
*
4W2F|1|DA|C|130
4W2F|1|DA|G|131
*
4W2F|1|DA|C|148
4W2F|1|DA|A|149
4W2F|1|DA|C|150
*
4W2F|1|DA|G|176
4W2F|1|DA|G|177
4W2F|1|DA|G|178

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D7

50S Ribosomal Protein L34

Chain DX

50S Ribosomal Protein L23