3D structure

PDB id
4W2G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
CAAG*CGGACGGG*CAG*CAC*GGCAG
Length
23 nucleotides
Bulged bases
4W2G|1|AA|A|109, 4W2G|1|AA|C|352
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_4W2G_002 not in the Motif Atlas
Homologous match to J5_6CZR_021
Geometric discrepancy: 0.0838
The information below is about J5_6CZR_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.5
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
5

Unit IDs

4W2G|1|AA|C|58
4W2G|1|AA|A|59
4W2G|1|AA|A|60
4W2G|1|AA|G|61
*
4W2G|1|AA|C|106
4W2G|1|AA|G|107
4W2G|1|AA|G|108
4W2G|1|AA|A|109
4W2G|1|AA|C|110
4W2G|1|AA|G|111
4W2G|1|AA|G|112
4W2G|1|AA|G|113
*
4W2G|1|AA|C|314
4W2G|1|AA|A|315
4W2G|1|AA|G|316
*
4W2G|1|AA|C|337
4W2G|1|AA|A|338
4W2G|1|AA|C|339
*
4W2G|1|AA|G|350
4W2G|1|AA|G|351
4W2G|1|AA|C|352
4W2G|1|AA|A|353
4W2G|1|AA|G|354

Current chains

Chain AA
16S Ribosomal RNA

Nearby chains

Chain AP
30S Ribosomal Protein S16
Chain AT
30S Ribosomal Protein S20
Chain BO
50S Ribosomal Protein L14
Chain BT
50S Ribosomal Protein L19

Coloring options:


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