J5_4W2G_019

3D structure

PDB id

4W2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

UUUA*UUUG*CG*CG*CGGAUAAAA

Length

21 nucleotides

Bulged bases

4W2G|1|DA|U|2076, 4W2G|1|DA|G|2428, 4W2G|1|DA|G|2429, 4W2G|1|DA|A|2430, 4W2G|1|DA|U|2431, 4W2G|1|DA|A|2434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4W2G_019 not in the Motif Atlas

Homologous match to J5_9DFE_007

Geometric discrepancy: 0.0555

The information below is about J5_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_39529.1

Basepair signature

cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4W2G|1|DA|U|2074
4W2G|1|DA|U|2075
4W2G|1|DA|U|2076
4W2G|1|DA|A|2077
*
4W2G|1|DA|U|2243
4W2G|1|DA|U|2244
4W2G|1|DA|U|2245
4W2G|1|DA|G|2246
*
4W2G|1|DA|C|2258
4W2G|1|DA|G|2259
*
4W2G|1|DA|C|2281
4W2G|1|DA|G|2282
*
4W2G|1|DA|C|2427
4W2G|1|DA|G|2428
4W2G|1|DA|G|2429
4W2G|1|DA|A|2430
4W2G|1|DA|U|2431
4W2G|1|DA|A|2432
4W2G|1|DA|A|2433
4W2G|1|DA|A|2434
4W2G|1|DA|A|2435

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain CY

Transfer RNA; tRNA

Chain D0

50S Ribosomal Protein L27

Chain D1

50S Ribosomal Protein L28

Chain D6

50S Ribosomal Protein L33

Chain DD

50S Ribosomal Protein L2

Chain DP

50S Ribosomal Protein L15