J5_4W2H_009
3D structure
- PDB id
- 4W2H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 4W2H|1|BA|U|2098, 4W2H|1|BA|G|2440, 4W2H|1|BA|G|2441, 4W2H|1|BA|A|2442, 4W2H|1|BA|U|2443
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4W2H_009 not in the Motif Atlas
- Homologous match to J5_9DFE_007
- Geometric discrepancy: 0.0417
- The information below is about J5_9DFE_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
4W2H|1|BA|U|2096
4W2H|1|BA|U|2097
4W2H|1|BA|U|2098
4W2H|1|BA|A|2099
*
4W2H|1|BA|U|2255
4W2H|1|BA|U|2256
4W2H|1|BA|U|2257
4W2H|1|BA|G|2258
*
4W2H|1|BA|C|2270
4W2H|1|BA|G|2271
*
4W2H|1|BA|C|2293
4W2H|1|BA|G|2294
*
4W2H|1|BA|C|2439
4W2H|1|BA|G|2440
4W2H|1|BA|G|2441
4W2H|1|BA|A|2442
4W2H|1|BA|U|2443
4W2H|1|BA|A|2444
4W2H|1|BA|A|2445
4W2H|1|BA|A|2446
4W2H|1|BA|A|2447
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain AY
- Transfer RNA; tRNA
- Chain B0
- 50S Ribosomal Protein L27
- Chain B1
- 50S Ribosomal Protein L28
- Chain B6
- 50S Ribosomal Protein L33
- Chain BD
- 50S Ribosomal Protein L2
- Chain BP
- 50S Ribosomal Protein L15
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