J5_4W4G_011

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4W4G_011 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0577

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4W4G|1|XA|C|36
4W4G|1|XA|U|37
4W4G|1|XA|G|38
4W4G|1|XA|G|39
*
4W4G|1|XA|C|403
4W4G|1|XA|U|404
4W4G|1|XA|U|405
4W4G|1|XA|G|406
*
4W4G|1|XA|C|436
4W4G|1|XA|U|437
4W4G|1|XA|G|438
4W4G|1|XA|A|439
4W4G|1|XA|A|440
4W4G|1|XA|C|442
*
4W4G|1|XA|G|492
4W4G|1|XA|G|493
4W4G|1|XA|U|494
4W4G|1|XA|A|495
4W4G|1|XA|A|496
4W4G|1|XA|U|497
4W4G|1|XA|A|498
4W4G|1|XA|G|500
*
4W4G|1|XA|C|545
4W4G|1|XA|G|546
4W4G|1|XA|A|547
4W4G|1|XA|G|548

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XD

30S ribosomal protein S4

Chain XL

30S ribosomal protein S12