J5_4WCE_001

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

CAAUGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

4WCE|1|X|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4WCE_001 not in the Motif Atlas

Homologous match to J5_4WF9_001

Geometric discrepancy: 0.0667

The information below is about J5_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4WCE|1|X|C|47
4WCE|1|X|A|48
4WCE|1|X|A|49
4WCE|1|X|U|50
4WCE|1|X|G|51
4WCE|1|X|A|52
4WCE|1|X|A|53
4WCE|1|X|G|54
*
4WCE|1|X|C|115
4WCE|1|X|G|116
4WCE|1|X|A|117
4WCE|1|X|A|118
4WCE|1|X|U|119
4WCE|1|X|G|120
*
4WCE|1|X|C|129
4WCE|1|X|A|130
*
4WCE|1|X|U|149
4WCE|1|X|A|150
4WCE|1|X|U|151
*
4WCE|1|X|A|178
4WCE|1|X|A|179
4WCE|1|X|G|180

Current chains

Chain X

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain Q

50S ribosomal protein L23