J5_4WF9_003

3D structure

PDB id

4WF9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

UAG*CGUGC*GAA*UG*CA

Length

15 nucleotides

Bulged bases

4WF9|1|X|A|577, 4WF9|1|X|U|605

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_43153.6

Basepair signature

cWW-cWW-cWW-F-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4WF9|1|X|U|576
4WF9|1|X|A|577
4WF9|1|X|G|578
*
4WF9|1|X|C|603
4WF9|1|X|G|604
4WF9|1|X|U|605
4WF9|1|X|G|606
4WF9|1|X|C|607
*
4WF9|1|X|G|620
4WF9|1|X|A|621
4WF9|1|X|A|622
*
4WF9|1|X|U|1299
4WF9|1|X|G|1300
*
4WF9|1|X|C|2044
4WF9|1|X|A|2045

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain G

50S ribosomal protein L13

Chain N

50S ribosomal protein L20

Chain O

50S ribosomal protein L21

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32