3D structure

PDB id
4WF9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.43 Å

Loop

Sequence
UUUA*UUUG*CG*CG*CGGAUAAAA
Length
21 nucleotides
Bulged bases
4WF9|1|X|U|2103, 4WF9|1|X|G|2455, 4WF9|1|X|G|2456, 4WF9|1|X|A|2457, 4WF9|1|X|U|2458
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_39529.1
Basepair signature
cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
3

Unit IDs

4WF9|1|X|U|2101
4WF9|1|X|U|2102
4WF9|1|X|U|2103
4WF9|1|X|A|2104
*
4WF9|1|X|U|2270
4WF9|1|X|U|2271
4WF9|1|X|U|2272
4WF9|1|X|G|2273
*
4WF9|1|X|C|2285
4WF9|1|X|G|2286
*
4WF9|1|X|C|2308
4WF9|1|X|G|2309
*
4WF9|1|X|C|2454
4WF9|1|X|G|2455
4WF9|1|X|G|2456
4WF9|1|X|A|2457
4WF9|1|X|U|2458
4WF9|1|X|A|2459
4WF9|1|X|A|2460
4WF9|1|X|A|2461
4WF9|1|X|A|2462

Current chains

Chain X
23S ribosomal RNA

Nearby chains

Chain 3
50S ribosomal protein L35
Chain A
50S ribosomal protein L2
Chain I
50S ribosomal protein L15
Chain T
50S ribosomal protein L27

Coloring options:

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