J5_4WFB_004

3D structure

PDB id

4WFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

GCAAAAUGA*UG*CC*GUGAAUAGG*CAC

Length

25 nucleotides

Bulged bases

4WFB|1|X|G|1785, 4WFB|1|X|G|1790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4WFB_004 not in the Motif Atlas

Homologous match to J5_4WF9_005

Geometric discrepancy: 0.0547

The information below is about J5_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

10

Unit IDs

4WFB|1|X|G|1718
4WFB|1|X|C|1719
4WFB|1|X|A|1720
4WFB|1|X|A|1721
4WFB|1|X|A|1722
4WFB|1|X|A|1723
4WFB|1|X|U|1724
4WFB|1|X|G|1725
4WFB|1|X|A|1726
*
4WFB|1|X|U|1750
4WFB|1|X|G|1751
*
4WFB|1|X|C|1778
4WFB|1|X|C|1779
*
4WFB|1|X|G|1783
4WFB|1|X|U|1784
4WFB|1|X|G|1785
4WFB|1|X|A|1786
4WFB|1|X|A|1787
4WFB|1|X|U|1788
4WFB|1|X|A|1789
4WFB|1|X|G|1790
4WFB|1|X|G|1791
*
4WFB|1|X|C|2015
4WFB|1|X|A|2016
4WFB|1|X|C|2017

Current chains

Chain X

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain H

50S ribosomal protein L14

Chain M

50S ribosomal protein L19