J5_4WOI_005
3D structure
- PDB id
- 4WOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CAG*CGUAC*GGG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 4WOI|1|BA|A|532, 4WOI|1|BA|U|562
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4WOI_005 not in the Motif Atlas
- Homologous match to J5_5J7L_014
- Geometric discrepancy: 0.0613
- The information below is about J5_5J7L_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4WOI|1|BA|C|531
4WOI|1|BA|A|532
4WOI|1|BA|G|533
*
4WOI|1|BA|C|560
4WOI|1|BA|G|561
4WOI|1|BA|U|562
4WOI|1|BA|A|563
4WOI|1|BA|C|564
*
4WOI|1|BA|G|577
4WOI|1|BA|G|578
4WOI|1|BA|G|579
*
4WOI|1|BA|C|1261
4WOI|1|BA|A|1262
*
4WOI|1|BA|U|2017
4WOI|1|BA|G|2018
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain B0
- 50S ribosomal protein L32
- Chain BE
- 50S ribosomal protein L4
- Chain BQ
- 50S ribosomal protein L20
- Chain BR
- 50S ribosomal protein L21
- Chain BS
- 50S ribosomal protein L22
Coloring options: