J5_4WPO_004
3D structure
- PDB id
- 4WPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CGACUC*GGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 4WPO|1|AA|U|1301
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4WPO_004 not in the Motif Atlas
- Homologous match to J5_9DFE_004
- Geometric discrepancy: 0.0441
- The information below is about J5_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
4WPO|1|AA|C|607
4WPO|1|AA|G|608
4WPO|1|AA|A|609
4WPO|1|AA|C|610
4WPO|1|AA|U|611
4WPO|1|AA|C|612
*
4WPO|1|AA|G|715
4WPO|1|AA|G|716
4WPO|1|AA|A|717
4WPO|1|AA|C|718
*
4WPO|1|AA|G|856
4WPO|1|AA|U|857
4WPO|1|AA|U|858
4WPO|1|AA|C|859
*
4WPO|1|AA|G|1240
4WPO|1|AA|C|1241
*
4WPO|1|AA|G|1296
4WPO|1|AA|C|1297
4WPO|1|AA|G|1298
4WPO|1|AA|A|1299
4WPO|1|AA|A|1300
4WPO|1|AA|U|1301
4WPO|1|AA|G|1302
Current chains
- Chain AA
- 23S Ribosomal RNA
Nearby chains
- Chain A8
- 50S ribosomal protein L35
- Chain AF
- 50S ribosomal protein L4
- Chain AP
- 50S ribosomal protein L15
- Chain AU
- 50S ribosomal protein L20
- Chain AV
- 50S ribosomal protein L21
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