J5_4WPO_008
3D structure
- PDB id
- 4WPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4WPO_008 not in the Motif Atlas
- Homologous match to J5_4LFB_001
- Geometric discrepancy: 0.0701
- The information below is about J5_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_70703.1
- Basepair signature
- cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
4WPO|1|BA|C|36
4WPO|1|BA|U|37
4WPO|1|BA|G|38
4WPO|1|BA|G|39
*
4WPO|1|BA|C|403
4WPO|1|BA|U|404
4WPO|1|BA|U|405
4WPO|1|BA|G|406
*
4WPO|1|BA|C|436
4WPO|1|BA|U|437
4WPO|1|BA|G|438
4WPO|1|BA|A|439
4WPO|1|BA|A|441
4WPO|1|BA|C|442
*
4WPO|1|BA|G|492
4WPO|1|BA|G|493
4WPO|1|BA|U|494
4WPO|1|BA|A|495
4WPO|1|BA|A|496
4WPO|1|BA|U|498
4WPO|1|BA|A|499
4WPO|1|BA|G|500
*
4WPO|1|BA|C|545
4WPO|1|BA|G|546
4WPO|1|BA|A|547
4WPO|1|BA|G|548
Current chains
- Chain BA
- 16S Ribosomal RNA
Nearby chains
- Chain BD
- 30S ribosomal protein S4
- Chain BL
- 30S ribosomal protein S12
- Chain BZ
- 50S ribosomal protein L9,Elongation factor G
Coloring options: