J5_4WPO_010

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4WPO|1|CA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4WPO_010 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0543

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4WPO|1|CA|C|47
4WPO|1|CA|G|48
4WPO|1|CA|A|49
4WPO|1|CA|U|50
4WPO|1|CA|G|51
4WPO|1|CA|A|52
4WPO|1|CA|A|53
4WPO|1|CA|G|54
*
4WPO|1|CA|C|116
4WPO|1|CA|G|117
4WPO|1|CA|A|118
4WPO|1|CA|A|119
4WPO|1|CA|U|120
4WPO|1|CA|G|121
*
4WPO|1|CA|C|130
4WPO|1|CA|G|131
*
4WPO|1|CA|C|148
4WPO|1|CA|A|149
4WPO|1|CA|C|150
*
4WPO|1|CA|G|176
4WPO|1|CA|G|177
4WPO|1|CA|G|178

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C7

50S ribosomal protein L34

Chain CX

50S ribosomal protein L23