J5_4WQ1_001

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4WQ1_001 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0725

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4WQ1|1|13|C|36
4WQ1|1|13|U|37
4WQ1|1|13|G|38
4WQ1|1|13|G|39
*
4WQ1|1|13|C|403
4WQ1|1|13|U|404
4WQ1|1|13|U|405
4WQ1|1|13|G|406
*
4WQ1|1|13|C|436
4WQ1|1|13|U|437
4WQ1|1|13|G|438
4WQ1|1|13|A|439
4WQ1|1|13|A|440
4WQ1|1|13|C|442
*
4WQ1|1|13|G|492
4WQ1|1|13|G|493
4WQ1|1|13|U|494
4WQ1|1|13|A|495
4WQ1|1|13|A|496
4WQ1|1|13|U|497
4WQ1|1|13|A|498
4WQ1|1|13|G|500
*
4WQ1|1|13|C|545
4WQ1|1|13|G|546
4WQ1|1|13|A|547
4WQ1|1|13|G|548

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 3E

30S ribosomal protein S4

Chain 3I

30S ribosomal protein S12

Chain 69

50S ribosomal protein L9