J5_4WQF_007

3D structure

PDB id

4WQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UUUA*UUUG*CG*CG*CGGAUAAAA

Length

21 nucleotides

Bulged bases

4WQF|1|AA|U|2098, 4WQF|1|AA|G|2440, 4WQF|1|AA|G|2441, 4WQF|1|AA|A|2442, 4WQF|1|AA|U|2443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4WQF_007 not in the Motif Atlas

Homologous match to J5_9DFE_007

Geometric discrepancy: 0.0614

The information below is about J5_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_39529.2

Basepair signature

cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4WQF|1|AA|U|2096
4WQF|1|AA|U|2097
4WQF|1|AA|U|2098
4WQF|1|AA|A|2099
*
4WQF|1|AA|U|2255
4WQF|1|AA|U|2256
4WQF|1|AA|U|2257
4WQF|1|AA|G|2258
*
4WQF|1|AA|C|2270
4WQF|1|AA|G|2271
*
4WQF|1|AA|C|2293
4WQF|1|AA|G|2294
*
4WQF|1|AA|C|2439
4WQF|1|AA|G|2440
4WQF|1|AA|G|2441
4WQF|1|AA|A|2442
4WQF|1|AA|U|2443
4WQF|1|AA|A|2444
4WQF|1|AA|A|2445
4WQF|1|AA|A|2446
4WQF|1|AA|A|2447

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A0

50S ribosomal protein L27

Chain A1

50S ribosomal protein L28

Chain A6

50S ribosomal protein L33

Chain AD

50S ribosomal protein L2

Chain AP

50S ribosomal protein L15

Chain BW

Transfer RNA; tRNA

Chain BY

Transfer RNA; tRNA