J5_4WQF_018

3D structure

PDB id

4WQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4WQF_018 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0783

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4WQF|1|DA|C|36
4WQF|1|DA|U|37
4WQF|1|DA|G|38
4WQF|1|DA|G|39
*
4WQF|1|DA|C|403
4WQF|1|DA|U|404
4WQF|1|DA|U|405
4WQF|1|DA|G|406
*
4WQF|1|DA|C|436
4WQF|1|DA|U|437
4WQF|1|DA|G|438
4WQF|1|DA|A|439
4WQF|1|DA|A|441
4WQF|1|DA|C|442
*
4WQF|1|DA|G|492
4WQF|1|DA|G|493
4WQF|1|DA|U|494
4WQF|1|DA|A|495
4WQF|1|DA|A|496
4WQF|1|DA|U|498
4WQF|1|DA|A|499
4WQF|1|DA|G|500
*
4WQF|1|DA|C|545
4WQF|1|DA|G|546
4WQF|1|DA|A|547
4WQF|1|DA|G|548

Current chains

Chain DA

16S Ribosomal RNA

Nearby chains

Chain DD

30S ribosomal protein S4

Chain DL

30S ribosomal protein S12

Chain DZ

50S ribosomal protein L9,Elongation factor G