J5_4WQR_019
3D structure
- PDB id
- 4WQR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 4WQR|1|1H|U|2076, 4WQR|1|1H|G|2428, 4WQR|1|1H|G|2429, 4WQR|1|1H|A|2430, 4WQR|1|1H|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4WQR_019 not in the Motif Atlas
- Homologous match to J5_9DFE_007
- Geometric discrepancy: 0.0754
- The information below is about J5_9DFE_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
4WQR|1|1H|U|2074
4WQR|1|1H|U|2075
4WQR|1|1H|U|2076
4WQR|1|1H|A|2077
*
4WQR|1|1H|U|2243
4WQR|1|1H|U|2244
4WQR|1|1H|U|2245
4WQR|1|1H|G|2246
*
4WQR|1|1H|C|2258
4WQR|1|1H|G|2259
*
4WQR|1|1H|C|2281
4WQR|1|1H|G|2282
*
4WQR|1|1H|C|2427
4WQR|1|1H|G|2428
4WQR|1|1H|G|2429
4WQR|1|1H|A|2430
4WQR|1|1H|U|2431
4WQR|1|1H|A|2432
4WQR|1|1H|A|2433
4WQR|1|1H|A|2434
4WQR|1|1H|A|2435
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L2
- Chain 3K
- Transfer RNA; tRNA
- Chain 78
- 50S ribosomal protein L15
- Chain I8
- 50S ribosomal protein L27
- Chain J8
- 50S ribosomal protein L28
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