J5_4WQU_007

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UUUA*UUUG*CG*CG*CGGAUAAAA

Length

21 nucleotides

Bulged bases

4WQU|1|AA|U|2098, 4WQU|1|AA|G|2440, 4WQU|1|AA|G|2441, 4WQU|1|AA|A|2442, 4WQU|1|AA|U|2443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4WQU_007 not in the Motif Atlas

Homologous match to J5_9DFE_007

Geometric discrepancy: 0.0608

The information below is about J5_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_39529.1

Basepair signature

cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4WQU|1|AA|U|2096
4WQU|1|AA|U|2097
4WQU|1|AA|U|2098
4WQU|1|AA|A|2099
*
4WQU|1|AA|U|2255
4WQU|1|AA|U|2256
4WQU|1|AA|U|2257
4WQU|1|AA|G|2258
*
4WQU|1|AA|C|2270
4WQU|1|AA|G|2271
*
4WQU|1|AA|C|2293
4WQU|1|AA|G|2294
*
4WQU|1|AA|C|2439
4WQU|1|AA|G|2440
4WQU|1|AA|G|2441
4WQU|1|AA|A|2442
4WQU|1|AA|U|2443
4WQU|1|AA|A|2444
4WQU|1|AA|A|2445
4WQU|1|AA|A|2446
4WQU|1|AA|A|2447

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A0

50S ribosomal protein L27

Chain A1

50S ribosomal protein L28

Chain A6

50S ribosomal protein L33

Chain AD

50S ribosomal protein L2

Chain AP

50S ribosomal protein L15

Chain BW

Transfer RNA; tRNA

Chain BY

Transfer RNA; tRNA