J5_4WQU_013

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGACUC*GGAC*GUUC*GC*GCGAAUG

Length

23 nucleotides

Bulged bases

4WQU|1|CA|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4WQU_013 not in the Motif Atlas

Homologous match to J5_9DFE_004

Geometric discrepancy: 0.0588

The information below is about J5_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.5

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

4WQU|1|CA|C|584
4WQU|1|CA|G|585
4WQU|1|CA|A|586
4WQU|1|CA|C|587
4WQU|1|CA|U|588
4WQU|1|CA|C|589
*
4WQU|1|CA|G|668
4WQU|1|CA|G|669
4WQU|1|CA|A|670
4WQU|1|CA|C|671
*
4WQU|1|CA|G|809
4WQU|1|CA|U|810
4WQU|1|CA|U|811
4WQU|1|CA|C|812
*
4WQU|1|CA|G|1195
4WQU|1|CA|C|1196
*
4WQU|1|CA|G|1250
4WQU|1|CA|C|1251
4WQU|1|CA|G|1252
4WQU|1|CA|A|1253
4WQU|1|CA|A|1254
4WQU|1|CA|U|1255
4WQU|1|CA|G|1256

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C8

50S ribosomal protein L35

Chain CF

50S ribosomal protein L4

Chain CP

50S ribosomal protein L15

Chain CU

50S ribosomal protein L20

Chain CV

50S ribosomal protein L21