J5_4WQU_017

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UUUA*UUUG*CG*CG*CGGAUAAAA

Length

21 nucleotides

Bulged bases

4WQU|1|CA|U|2076, 4WQU|1|CA|G|2428, 4WQU|1|CA|G|2429, 4WQU|1|CA|A|2430, 4WQU|1|CA|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4WQU_017 not in the Motif Atlas

Homologous match to J5_9DFE_007

Geometric discrepancy: 0.0603

The information below is about J5_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_39529.1

Basepair signature

cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4WQU|1|CA|U|2074
4WQU|1|CA|U|2075
4WQU|1|CA|U|2076
4WQU|1|CA|A|2077
*
4WQU|1|CA|U|2243
4WQU|1|CA|U|2244
4WQU|1|CA|U|2245
4WQU|1|CA|G|2246
*
4WQU|1|CA|C|2258
4WQU|1|CA|G|2259
*
4WQU|1|CA|C|2281
4WQU|1|CA|G|2282
*
4WQU|1|CA|C|2427
4WQU|1|CA|G|2428
4WQU|1|CA|G|2429
4WQU|1|CA|A|2430
4WQU|1|CA|U|2431
4WQU|1|CA|A|2432
4WQU|1|CA|A|2433
4WQU|1|CA|A|2434
4WQU|1|CA|A|2435

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C0

50S ribosomal protein L27

Chain C1

50S ribosomal protein L28

Chain C6

50S ribosomal protein L33

Chain CD

50S ribosomal protein L2

Chain CP

50S ribosomal protein L15

Chain DW

Transfer RNA; tRNA

Chain DY

Transfer RNA; tRNA