J5_4WQY_018

3D structure

PDB id

4WQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUGG*CUUG*CUGAACC*GGGUAAUAG*CGAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4WQY_018 not in the Motif Atlas

Homologous match to J5_6CZR_007

Geometric discrepancy: 0.1067

The information below is about J5_6CZR_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WQY|1|DA|C|36
4WQY|1|DA|U|37
4WQY|1|DA|G|38
4WQY|1|DA|G|39
*
4WQY|1|DA|C|403
4WQY|1|DA|U|404
4WQY|1|DA|U|405
4WQY|1|DA|G|406
*
4WQY|1|DA|C|436
4WQY|1|DA|U|437
4WQY|1|DA|G|438
4WQY|1|DA|A|439
4WQY|1|DA|A|441
4WQY|1|DA|C|442
4WQY|1|DA|C|443
*
4WQY|1|DA|G|491
4WQY|1|DA|G|492
4WQY|1|DA|G|493
4WQY|1|DA|U|494
4WQY|1|DA|A|495
4WQY|1|DA|A|496
4WQY|1|DA|U|498
4WQY|1|DA|A|499
4WQY|1|DA|G|500
*
4WQY|1|DA|C|545
4WQY|1|DA|G|546
4WQY|1|DA|A|547
4WQY|1|DA|G|548

Current chains

Chain DA

16S Ribosomal RNA

Nearby chains

Chain DD

30S ribosomal protein S4

Chain DL

30S ribosomal protein S12

Chain DZ

50S ribosomal protein L9,Elongation factor G