J5_4WRA_010

3D structure

PDB id

4WRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4WRA_010 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0885

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4WRA|1|1G|C|36
4WRA|1|1G|U|37
4WRA|1|1G|G|38
4WRA|1|1G|G|39
*
4WRA|1|1G|C|403
4WRA|1|1G|U|404
4WRA|1|1G|U|405
4WRA|1|1G|G|406
*
4WRA|1|1G|C|436
4WRA|1|1G|U|437
4WRA|1|1G|G|438
4WRA|1|1G|A|439
4WRA|1|1G|A|440
4WRA|1|1G|C|442
*
4WRA|1|1G|G|492
4WRA|1|1G|G|493
4WRA|1|1G|U|494
4WRA|1|1G|A|495
4WRA|1|1G|A|496
4WRA|1|1G|U|497
4WRA|1|1G|A|498
4WRA|1|1G|G|500
*
4WRA|1|1G|C|545
4WRA|1|1G|G|546
4WRA|1|1G|A|547
4WRA|1|1G|G|548

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 32

30S ribosomal protein S4

Chain 3A

30S ribosomal protein S12