J5_4WSD_006
3D structure
- PDB id
- 4WSD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- CGACUC*GGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 4WSD|1|14|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4WSD_006 not in the Motif Atlas
- Homologous match to J5_9DFE_004
- Geometric discrepancy: 0.0712
- The information below is about J5_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
4WSD|1|14|C|584
4WSD|1|14|G|585
4WSD|1|14|A|586
4WSD|1|14|C|587
4WSD|1|14|U|588
4WSD|1|14|C|589
*
4WSD|1|14|G|668
4WSD|1|14|G|669
4WSD|1|14|A|670
4WSD|1|14|C|671
*
4WSD|1|14|G|809
4WSD|1|14|U|810
4WSD|1|14|U|811
4WSD|1|14|C|812
*
4WSD|1|14|G|1195
4WSD|1|14|C|1196
*
4WSD|1|14|G|1250
4WSD|1|14|C|1251
4WSD|1|14|G|1252
4WSD|1|14|A|1253
4WSD|1|14|A|1254
4WSD|1|14|U|1255
4WSD|1|14|G|1256
Current chains
- Chain 14
- 23S ribosomal RNA
Nearby chains
- Chain 35
- 50S ribosomal protein L15
- Chain 39
- 50S ribosomal protein L4
- Chain 85
- 50S ribosomal protein L20
- Chain 95
- 50S ribosomal protein L21
- Chain M5
- 50S ribosomal protein L35
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