3D structure

PDB id
4WSD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
UUUA*UUUG*CG*CG*CGGAUAAAA
Length
21 nucleotides
Bulged bases
4WSD|1|1H|U|2076, 4WSD|1|1H|G|2428, 4WSD|1|1H|G|2429, 4WSD|1|1H|A|2430, 4WSD|1|1H|U|2431
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_4WSD_019 not in the Motif Atlas
Homologous match to J5_9DFE_007
Geometric discrepancy: 0.0742
The information below is about J5_9DFE_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_39529.1
Basepair signature
cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
3

Unit IDs

4WSD|1|1H|U|2074
4WSD|1|1H|U|2075
4WSD|1|1H|U|2076
4WSD|1|1H|A|2077
*
4WSD|1|1H|U|2243
4WSD|1|1H|U|2244
4WSD|1|1H|U|2245
4WSD|1|1H|G|2246
*
4WSD|1|1H|C|2258
4WSD|1|1H|G|2259
*
4WSD|1|1H|C|2281
4WSD|1|1H|G|2282
*
4WSD|1|1H|C|2427
4WSD|1|1H|G|2428
4WSD|1|1H|G|2429
4WSD|1|1H|A|2430
4WSD|1|1H|U|2431
4WSD|1|1H|A|2432
4WSD|1|1H|A|2433
4WSD|1|1H|A|2434
4WSD|1|1H|A|2435

Current chains

Chain 1H
23S ribosomal RNA

Nearby chains

Chain 11
50S ribosomal protein L2
Chain 3K
Transfer RNA; tRNA
Chain 78
50S ribosomal protein L15
Chain I8
50S ribosomal protein L27
Chain J8
50S ribosomal protein L28

Coloring options:


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