J5_4WSD_020
3D structure
- PDB id
- 4WSD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4WSD_020 not in the Motif Atlas
- Homologous match to J5_4LFB_001
- Geometric discrepancy: 0.073
- The information below is about J5_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_70703.1
- Basepair signature
- cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
4WSD|1|13|C|36
4WSD|1|13|U|37
4WSD|1|13|G|38
4WSD|1|13|G|39
*
4WSD|1|13|C|403
4WSD|1|13|U|404
4WSD|1|13|U|405
4WSD|1|13|G|406
*
4WSD|1|13|C|436
4WSD|1|13|U|437
4WSD|1|13|G|438
4WSD|1|13|A|439
4WSD|1|13|A|440
4WSD|1|13|C|442
*
4WSD|1|13|G|492
4WSD|1|13|G|493
4WSD|1|13|U|494
4WSD|1|13|A|495
4WSD|1|13|A|496
4WSD|1|13|U|497
4WSD|1|13|A|498
4WSD|1|13|G|500
*
4WSD|1|13|C|545
4WSD|1|13|G|546
4WSD|1|13|A|547
4WSD|1|13|G|548
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 3E
- 30S ribosomal protein S4
- Chain 3I
- 30S ribosomal protein S12
- Chain 69
- 50S ribosomal protein L9
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