J5_4WSM_010

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4WSM_010 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0866

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4WSM|1|1G|C|36
4WSM|1|1G|U|37
4WSM|1|1G|G|38
4WSM|1|1G|G|39
*
4WSM|1|1G|C|403
4WSM|1|1G|U|404
4WSM|1|1G|U|405
4WSM|1|1G|G|406
*
4WSM|1|1G|C|436
4WSM|1|1G|U|437
4WSM|1|1G|G|438
4WSM|1|1G|A|439
4WSM|1|1G|A|440
4WSM|1|1G|C|442
*
4WSM|1|1G|G|492
4WSM|1|1G|G|493
4WSM|1|1G|U|494
4WSM|1|1G|A|495
4WSM|1|1G|A|496
4WSM|1|1G|U|497
4WSM|1|1G|A|498
4WSM|1|1G|G|500
*
4WSM|1|1G|C|545
4WSM|1|1G|G|546
4WSM|1|1G|A|547
4WSM|1|1G|G|548

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 32

30S ribosomal protein S4

Chain 3A

30S ribosomal protein S12