J5_4WT1_010

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4WT1_010 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.1063

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4WT1|1|1G|C|36
4WT1|1|1G|U|37
4WT1|1|1G|G|38
4WT1|1|1G|G|39
*
4WT1|1|1G|C|403
4WT1|1|1G|U|404
4WT1|1|1G|U|405
4WT1|1|1G|G|406
*
4WT1|1|1G|C|436
4WT1|1|1G|U|437
4WT1|1|1G|G|438
4WT1|1|1G|A|439
4WT1|1|1G|A|440
4WT1|1|1G|C|442
*
4WT1|1|1G|G|492
4WT1|1|1G|G|493
4WT1|1|1G|U|494
4WT1|1|1G|A|495
4WT1|1|1G|A|496
4WT1|1|1G|U|497
4WT1|1|1G|A|498
4WT1|1|1G|G|500
*
4WT1|1|1G|C|545
4WT1|1|1G|G|546
4WT1|1|1G|A|547
4WT1|1|1G|G|548

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 32

30S ribosomal protein S4

Chain 3A

30S ribosomal protein S12