J5_4WT8_005

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4WT8|1|C1|U|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4WT8_005 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0853

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4WT8|1|C1|C|45
4WT8|1|C1|G|46
4WT8|1|C1|A|47
4WT8|1|C1|U|48
4WT8|1|C1|G|49
4WT8|1|C1|A|50
4WT8|1|C1|A|51
4WT8|1|C1|G|52
*
4WT8|1|C1|C|113
4WT8|1|C1|G|114
4WT8|1|C1|A|115
4WT8|1|C1|A|116
4WT8|1|C1|U|117
4WT8|1|C1|G|118
*
4WT8|1|C1|C|127
4WT8|1|C1|G|128
*
4WT8|1|C1|C|147
4WT8|1|C1|A|148
4WT8|1|C1|C|149
*
4WT8|1|C1|G|164
4WT8|1|C1|G|165
4WT8|1|C1|G|166

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains

Chain C8

50S ribosomal protein L34