J5_4WT8_015
3D structure
- PDB id
- 4WT8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU
- Length
- 37 nucleotides
- Bulged bases
- 4WT8|1|D1|A|2083, 4WT8|1|D1|A|2459, 4WT8|1|D1|U|2460, 4WT8|1|D1|U|2620
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4WT8|1|D1|A|2078
4WT8|1|D1|A|2079
4WT8|1|D1|A|2080
4WT8|1|D1|A|2081
4WT8|1|D1|G|2082
4WT8|1|D1|A|2083
4WT8|1|D1|C|2084
4WT8|1|D1|C|2085
*
4WT8|1|D1|G|2457
4WT8|1|D1|G|2458
4WT8|1|D1|A|2459
4WT8|1|D1|U|2460
4WT8|1|D1|A|2461
4WT8|1|D1|A|2462
4WT8|1|D1|C|2463
4WT8|1|D1|A|2464
*
4WT8|1|D1|U|2511
4WT8|1|D1|C|2512
4WT8|1|D1|G|2513
4WT8|1|D1|A|2514
4WT8|1|D1|U|2515
4WT8|1|D1|G|2516
4WT8|1|D1|U|2517
4WT8|1|D1|C|2518
*
4WT8|1|D1|G|2593
4WT8|1|D1|G|2594
4WT8|1|D1|U|2595
4WT8|1|D1|U|2596
4WT8|1|D1|C|2597
4WT8|1|D1|A|2598
4WT8|1|D1|G|2599
*
4WT8|1|D1|C|2617
4WT8|1|D1|G|2618
4WT8|1|D1|G|2619
4WT8|1|D1|U|2620
4WT8|1|D1|C|2621
4WT8|1|D1|U|2622
Current chains
- Chain D1
- 23S rRNA (2899-MER)
Nearby chains
- Chain D4
- Transfer RNA; tRNA
- Chain D6
- 50S ribosomal protein L32
- Chain DB
- 50S ribosomal protein L2
- Chain DC
- 50S ribosomal protein L3
- Chain DD
- 50S ribosomal protein L4
- Chain DP
- 50S ribosomal protein L16
- Chain DV
- Transfer RNA; tRNA
- Chain Da
- 50S ribosomal protein L27
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