J5_4WWW_002

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4WWW_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.061

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4WWW|1|QA|C|36
4WWW|1|QA|U|37
4WWW|1|QA|G|38
4WWW|1|QA|G|39
*
4WWW|1|QA|C|403
4WWW|1|QA|G|404
4WWW|1|QA|U|405
4WWW|1|QA|G|406
*
4WWW|1|QA|C|436
4WWW|1|QA|U|437
4WWW|1|QA|U|438
4WWW|1|QA|U|439
4WWW|1|QA|C|440
4WWW|1|QA|A|441
4WWW|1|QA|G|442
*
4WWW|1|QA|C|492
4WWW|1|QA|A|493
4WWW|1|QA|G|494
4WWW|1|QA|A|495
4WWW|1|QA|A|496
4WWW|1|QA|G|497
4WWW|1|QA|A|498
4WWW|1|QA|A|499
4WWW|1|QA|G|500
*
4WWW|1|QA|C|545
4WWW|1|QA|A|546
4WWW|1|QA|A|547
4WWW|1|QA|G|548

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QD

30S ribosomal protein S4

Chain QL

30S ribosomal protein S12