J5_4WWW_004

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

4WWW|1|RA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4WWW_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0467

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4WWW|1|RA|C|47
4WWW|1|RA|G|48
4WWW|1|RA|A|49
4WWW|1|RA|U|50
4WWW|1|RA|G|51
4WWW|1|RA|A|52
4WWW|1|RA|A|53
4WWW|1|RA|G|54
*
4WWW|1|RA|C|116
4WWW|1|RA|G|117
4WWW|1|RA|A|118
4WWW|1|RA|A|119
4WWW|1|RA|U|120
4WWW|1|RA|G|121
*
4WWW|1|RA|C|130
4WWW|1|RA|A|131
*
4WWW|1|RA|U|148
4WWW|1|RA|A|149
4WWW|1|RA|U|150
*
4WWW|1|RA|A|176
4WWW|1|RA|G|177
4WWW|1|RA|G|178

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R2

50S ribosomal protein L34