J5_4WWW_018

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCGAUGUC*GGUUUAG*CGGUCC

Length

37 nucleotides

Bulged bases

4WWW|1|YA|A|2448, 4WWW|1|YA|U|2449, 4WWW|1|YA|U|2506, 4WWW|1|YA|U|2585, 4WWW|1|YA|U|2609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WWW|1|YA|G|2057
4WWW|1|YA|A|2058
4WWW|1|YA|A|2059
4WWW|1|YA|A|2060
4WWW|1|YA|G|2061
4WWW|1|YA|A|2062
4WWW|1|YA|C|2063
4WWW|1|YA|C|2064
*
4WWW|1|YA|G|2446
4WWW|1|YA|G|2447
4WWW|1|YA|A|2448
4WWW|1|YA|U|2449
4WWW|1|YA|A|2450
4WWW|1|YA|A|2451
4WWW|1|YA|C|2452
4WWW|1|YA|A|2453
*
4WWW|1|YA|U|2500
4WWW|1|YA|C|2501
4WWW|1|YA|G|2502
4WWW|1|YA|A|2503
4WWW|1|YA|U|2504
4WWW|1|YA|G|2505
4WWW|1|YA|U|2506
4WWW|1|YA|C|2507
*
4WWW|1|YA|G|2582
4WWW|1|YA|G|2583
4WWW|1|YA|U|2584
4WWW|1|YA|U|2585
4WWW|1|YA|U|2586
4WWW|1|YA|A|2587
4WWW|1|YA|G|2588
*
4WWW|1|YA|C|2606
4WWW|1|YA|G|2607
4WWW|1|YA|G|2608
4WWW|1|YA|U|2609
4WWW|1|YA|C|2610
4WWW|1|YA|C|2611

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y0

50S ribosomal protein L32

Chain YC

50S ribosomal protein L2

Chain YD

50S ribosomal protein L3

Chain YE

50S ribosomal protein L4

Chain YL

50S ribosomal protein L15

Chain YS

50S ribosomal protein L22