J5_4WZD_010

3D structure

PDB id

4WZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with cognate tRNA-Tyr in the P-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUUA*UUUG*CG*CG*CGGAUAAAA

Length

21 nucleotides

Bulged bases

4WZD|1|14|U|2076||||P_1, 4WZD|1|14|G|2428||||P_1, 4WZD|1|14|G|2429||||P_1, 4WZD|1|14|A|2430||||P_1, 4WZD|1|14|U|2431||||P_1

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4WZD_010 not in the Motif Atlas

Homologous match to J5_9DFE_007

Geometric discrepancy: 0.0757

The information below is about J5_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_39529.1

Basepair signature

cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4WZD|1|14|U|2074||||P_1
4WZD|1|14|U|2075||||P_1
4WZD|1|14|U|2076||||P_1
4WZD|1|14|A|2077||||P_1
*
4WZD|1|14|U|2243||||P_1
4WZD|1|14|U|2244||||P_1
4WZD|1|14|U|2245||||P_1
4WZD|1|14|G|2246||||P_1
*
4WZD|1|14|C|2258||||P_1
4WZD|1|14|G|2259||||P_1
*
4WZD|1|14|C|2281||||P_1
4WZD|1|14|G|2282||||P_1
*
4WZD|1|14|C|2427||||P_1
4WZD|1|14|G|2428||||P_1
4WZD|1|14|G|2429||||P_1
4WZD|1|14|A|2430||||P_1
4WZD|1|14|U|2431||||P_1
4WZD|1|14|A|2432||||P_1
4WZD|1|14|A|2433||||P_1
4WZD|1|14|A|2434||||P_1
4WZD|1|14|A|2435||||P_1

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain 35

50S ribosomal protein L15

Chain 3L

Transfer RNA; tRNA

Chain E5

50S ribosomal protein L27

Chain F5

50S ribosomal protein L28