J5_4WZO_001

3D structure

PDB id

4WZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-fMet and mRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4WZO_001 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0956

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4WZO|1|13|C|36
4WZO|1|13|U|37
4WZO|1|13|G|38
4WZO|1|13|G|39
*
4WZO|1|13|C|403
4WZO|1|13|U|404
4WZO|1|13|U|405
4WZO|1|13|G|406
*
4WZO|1|13|C|436
4WZO|1|13|U|437
4WZO|1|13|G|438
4WZO|1|13|A|439
4WZO|1|13|A|440
4WZO|1|13|C|442
*
4WZO|1|13|G|492
4WZO|1|13|G|493
4WZO|1|13|U|494
4WZO|1|13|A|495
4WZO|1|13|A|496
4WZO|1|13|U|497
4WZO|1|13|A|498
4WZO|1|13|G|500
*
4WZO|1|13|C|545
4WZO|1|13|G|546
4WZO|1|13|A|547
4WZO|1|13|G|548

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 3E

30S ribosomal protein S4

Chain 3I

30S ribosomal protein S12

Chain 69

50S ribosomal protein L9