3D structure

PDB id
4WZO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-fMet and mRNA
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CAAG*CGGACGGG*CAG*CAC*GGCAG
Length
23 nucleotides
Bulged bases
4WZO|1|13|A|109, 4WZO|1|13|C|352
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_4WZO_002 not in the Motif Atlas
Homologous match to J5_4LFB_002
Geometric discrepancy: 0.0812
The information below is about J5_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.6
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

4WZO|1|13|C|58
4WZO|1|13|A|59
4WZO|1|13|A|60
4WZO|1|13|G|61
*
4WZO|1|13|C|106
4WZO|1|13|G|107
4WZO|1|13|G|108
4WZO|1|13|A|109
4WZO|1|13|C|110
4WZO|1|13|G|111
4WZO|1|13|G|112
4WZO|1|13|G|113
*
4WZO|1|13|C|314
4WZO|1|13|A|315
4WZO|1|13|G|316
*
4WZO|1|13|C|337
4WZO|1|13|A|338
4WZO|1|13|C|339
*
4WZO|1|13|G|350
4WZO|1|13|G|351
4WZO|1|13|C|352
4WZO|1|13|A|353
4WZO|1|13|G|354

Current chains

Chain 13
16S ribosomal RNA

Nearby chains

Chain 68
50S ribosomal protein L14
Chain 7I
30S ribosomal protein S16
Chain B8
50S ribosomal protein L19
Chain BI
30S ribosomal protein S20

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2114 s