J5_4WZO_003

3D structure

PDB id

4WZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-fMet and mRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4WZO|1|14|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4WZO_003 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0814

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4WZO|1|14|C|47
4WZO|1|14|G|48
4WZO|1|14|A|49
4WZO|1|14|U|50
4WZO|1|14|G|51
4WZO|1|14|A|52
4WZO|1|14|A|53
4WZO|1|14|G|54
*
4WZO|1|14|C|116
4WZO|1|14|G|117
4WZO|1|14|A|118
4WZO|1|14|A|119
4WZO|1|14|U|120
4WZO|1|14|G|121
*
4WZO|1|14|C|130
4WZO|1|14|G|131
*
4WZO|1|14|C|148
4WZO|1|14|A|149
4WZO|1|14|C|150
*
4WZO|1|14|G|176
4WZO|1|14|G|177
4WZO|1|14|G|178

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L23

Chain L5

50S ribosomal protein L34