J5_4X65_002

3D structure

PDB id

4X65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

4X65|1|A|A|109, 4X65|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4X65_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0529

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4X65|1|A|C|58
4X65|1|A|A|59
4X65|1|A|A|60
4X65|1|A|G|61
*
4X65|1|A|C|106
4X65|1|A|G|107
4X65|1|A|G|108
4X65|1|A|A|109
4X65|1|A|C|110
4X65|1|A|G|111
4X65|1|A|G|112
4X65|1|A|G|113
*
4X65|1|A|C|314
4X65|1|A|A|315
4X65|1|A|G|316
*
4X65|1|A|C|337
4X65|1|A|A|338
4X65|1|A|C|339
*
4X65|1|A|G|350
4X65|1|A|G|351
4X65|1|A|C|352
4X65|1|A|A|353
4X65|1|A|G|354

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20