J5_4XEJ_002
3D structure
- PDB id
- 4XEJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- IRES bound to bacterial Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- GCAAGU*GCGGACGGG*CAG*CAC*GGCAGC
- Length
- 27 nucleotides
- Bulged bases
- 4XEJ|1|A16S|A|109
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4XEJ|1|A16S|G|57
4XEJ|1|A16S|C|58
4XEJ|1|A16S|A|59
4XEJ|1|A16S|A|60
4XEJ|1|A16S|G|61
4XEJ|1|A16S|U|62
*
4XEJ|1|A16S|G|105
4XEJ|1|A16S|C|106
4XEJ|1|A16S|G|107
4XEJ|1|A16S|G|108
4XEJ|1|A16S|A|109
4XEJ|1|A16S|C|110
4XEJ|1|A16S|G|111
4XEJ|1|A16S|G|112
4XEJ|1|A16S|G|113
*
4XEJ|1|A16S|C|314
4XEJ|1|A16S|A|315
4XEJ|1|A16S|G|316
*
4XEJ|1|A16S|C|337
4XEJ|1|A16S|A|338
4XEJ|1|A16S|C|339
*
4XEJ|1|A16S|G|350
4XEJ|1|A16S|G|351
4XEJ|1|A16S|C|352
4XEJ|1|A16S|A|353
4XEJ|1|A16S|G|354
4XEJ|1|A16S|C|355
Current chains
- Chain A16S
- 16S ribosomal RNA
Nearby chains
- Chain AL14
- 50S ribosomal protein L14
- Chain AL19
- 50S ribosomal protein L19
- Chain AS16
- 30S ribosomal protein S16
- Chain AS20
- 30S ribosomal protein S20
- Chain BL09
- 50S ribosomal protein L9
Coloring options: