J5_4XEJ_003

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4XEJ|1|A23S|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4XEJ_003 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0934

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4XEJ|1|A23S|C|47
4XEJ|1|A23S|G|48
4XEJ|1|A23S|A|49
4XEJ|1|A23S|U|50
4XEJ|1|A23S|G|51
4XEJ|1|A23S|A|52
4XEJ|1|A23S|A|53
4XEJ|1|A23S|G|54
*
4XEJ|1|A23S|C|116
4XEJ|1|A23S|G|117
4XEJ|1|A23S|A|118
4XEJ|1|A23S|A|119
4XEJ|1|A23S|U|120
4XEJ|1|A23S|G|121
*
4XEJ|1|A23S|C|130
4XEJ|1|A23S|G|131
*
4XEJ|1|A23S|C|148
4XEJ|1|A23S|A|149
4XEJ|1|A23S|C|150
*
4XEJ|1|A23S|G|176
4XEJ|1|A23S|G|177
4XEJ|1|A23S|G|178

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain AL23

50S ribosomal protein L23

Chain AL34

50S ribosomal protein L34