J5_4XEJ_008

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

ACGAAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCUCUAU

Length

44 nucleotides

Bulged bases

4XEJ|1|A23S|C|2055, 4XEJ|1|A23S|A|2062, 4XEJ|1|A23S|A|2448, 4XEJ|1|A23S|U|2506, 4XEJ|1|A23S|U|2585, 4XEJ|1|A23S|U|2609, 4XEJ|1|A23S|C|2612, 4XEJ|1|A23S|U|2613, 4XEJ|1|A23S|A|2614

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4XEJ|1|A23S|A|2054
4XEJ|1|A23S|C|2055
4XEJ|1|A23S|G|2056
4XEJ|1|A23S|A|2057
4XEJ|1|A23S|A|2058
4XEJ|1|A23S|A|2059
4XEJ|1|A23S|A|2060
4XEJ|1|A23S|G|2061
4XEJ|1|A23S|A|2062
4XEJ|1|A23S|C|2063
4XEJ|1|A23S|C|2064
*
4XEJ|1|A23S|G|2446
4XEJ|1|A23S|G|2447
4XEJ|1|A23S|A|2448
4XEJ|1|A23S|U|2449
4XEJ|1|A23S|A|2450
4XEJ|1|A23S|A|2451
4XEJ|1|A23S|C|2452
4XEJ|1|A23S|A|2453
*
4XEJ|1|A23S|U|2500
4XEJ|1|A23S|C|2501
4XEJ|1|A23S|G|2502
4XEJ|1|A23S|A|2503
4XEJ|1|A23S|U|2504
4XEJ|1|A23S|G|2505
4XEJ|1|A23S|U|2506
4XEJ|1|A23S|C|2507
*
4XEJ|1|A23S|G|2582
4XEJ|1|A23S|G|2583
4XEJ|1|A23S|U|2584
4XEJ|1|A23S|U|2585
4XEJ|1|A23S|C|2586
4XEJ|1|A23S|A|2587
4XEJ|1|A23S|G|2588
*
4XEJ|1|A23S|C|2606
4XEJ|1|A23S|G|2607
4XEJ|1|A23S|G|2608
4XEJ|1|A23S|U|2609
4XEJ|1|A23S|C|2610
4XEJ|1|A23S|U|2611
4XEJ|1|A23S|C|2612
4XEJ|1|A23S|U|2613
4XEJ|1|A23S|A|2614
4XEJ|1|A23S|U|2615

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain AL02

50S ribosomal protein L2

Chain AL03

50S ribosomal protein L3

Chain AL04

50S ribosomal protein L4

Chain AL22

50S ribosomal protein L22

Chain AL32

50S ribosomal protein L32