J5_4XEJ_011

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CAAG*CGGACGGGUG*CACAG*CAC*GGCAG

Length

27 nucleotides

Bulged bases

4XEJ|1|B16S|A|109, 4XEJ|1|B16S|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4XEJ|1|B16S|C|58
4XEJ|1|B16S|A|59
4XEJ|1|B16S|A|60
4XEJ|1|B16S|G|61
*
4XEJ|1|B16S|C|106
4XEJ|1|B16S|G|107
4XEJ|1|B16S|G|108
4XEJ|1|B16S|A|109
4XEJ|1|B16S|C|110
4XEJ|1|B16S|G|111
4XEJ|1|B16S|G|112
4XEJ|1|B16S|G|113
4XEJ|1|B16S|U|114
4XEJ|1|B16S|G|115
*
4XEJ|1|B16S|C|312
4XEJ|1|B16S|A|313
4XEJ|1|B16S|C|314
4XEJ|1|B16S|A|315
4XEJ|1|B16S|G|316
*
4XEJ|1|B16S|C|337
4XEJ|1|B16S|A|338
4XEJ|1|B16S|C|339
*
4XEJ|1|B16S|G|350
4XEJ|1|B16S|G|351
4XEJ|1|B16S|C|352
4XEJ|1|B16S|A|353
4XEJ|1|B16S|G|354

Current chains

Chain B16S

16S ribosomal RNA

Nearby chains

Chain BL14

50S ribosomal protein L14

Chain BL19

50S ribosomal protein L19

Chain BS16

30S ribosomal protein S16

Chain BS20

30S ribosomal protein S20