J5_4Y4O_002
3D structure
- PDB id
- 4Y4O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG
- Length
- 33 nucleotides
- Bulged bases
- 4Y4O|1|1A|U|288, 4Y4O|1|1A|U|432
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4Y4O|1|1A|C|257
4Y4O|1|1A|U|258
4Y4O|1|1A|A|259
4Y4O|1|1A|A|260
4Y4O|1|1A|A|261
4Y4O|1|1A|C|262
*
4Y4O|1|1A|G|282
4Y4O|1|1A|G|283
4Y4O|1|1A|G|284
4Y4O|1|1A|U|285
4Y4O|1|1A|C|286
4Y4O|1|1A|G|287
4Y4O|1|1A|U|288
4Y4O|1|1A|G|289
*
4Y4O|1|1A|C|396
4Y4O|1|1A|G|397
4Y4O|1|1A|A|398
4Y4O|1|1A|G|399
4Y4O|1|1A|U|400
4Y4O|1|1A|A|401
4Y4O|1|1A|C|402
*
4Y4O|1|1A|G|426
4Y4O|1|1A|G|427
4Y4O|1|1A|A|428
4Y4O|1|1A|A|429
4Y4O|1|1A|U|430
4Y4O|1|1A|C|431
4Y4O|1|1A|U|432
4Y4O|1|1A|G|433
*
4Y4O|1|1A|U|448
4Y4O|1|1A|A|449
4Y4O|1|1A|A|450
4Y4O|1|1A|G|451
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L28
- Chain 1I
- 50S ribosomal protein L9
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