J5_4Y4O_005
3D structure
- PDB id
- 4Y4O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- GCAAGUUGG*UG*CC*GUGAACAGG*CGC
- Length
- 25 nucleotides
- Bulged bases
- 4Y4O|1|1A|G|1789, 4Y4O|1|1A|G|1794
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4Y4O_005 not in the Motif Atlas
- Homologous match to J5_9DFE_005
- Geometric discrepancy: 0.0443
- The information below is about J5_9DFE_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4Y4O|1|1A|G|1721
4Y4O|1|1A|C|1722
4Y4O|1|1A|A|1723
4Y4O|1|1A|A|1724
4Y4O|1|1A|G|1725
4Y4O|1|1A|U|1726
4Y4O|1|1A|U|1727
4Y4O|1|1A|G|1728
4Y4O|1|1A|G|1729
*
4Y4O|1|1A|U|1753
4Y4O|1|1A|G|1754
*
4Y4O|1|1A|C|1782
4Y4O|1|1A|C|1783
*
4Y4O|1|1A|G|1787
4Y4O|1|1A|U|1788
4Y4O|1|1A|G|1789
4Y4O|1|1A|A|1790
4Y4O|1|1A|A|1791
4Y4O|1|1A|C|1792
4Y4O|1|1A|A|1793
4Y4O|1|1A|G|1794
4Y4O|1|1A|G|1795
*
4Y4O|1|1A|C|2010
4Y4O|1|1A|G|2011
4Y4O|1|1A|C|2012
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1E
- 50S ribosomal protein L3
- Chain 1O
- 50S ribosomal protein L14
- Chain 1T
- 50S ribosomal protein L19
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
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