J5_4Y4O_013

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CGACUC*GGAC*GUUC*GC*GCGAAUG

Length

23 nucleotides

Bulged bases

4Y4O|1|2A|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.2

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

4Y4O|1|2A|C|584
4Y4O|1|2A|G|585
4Y4O|1|2A|A|586
4Y4O|1|2A|C|587
4Y4O|1|2A|U|588
4Y4O|1|2A|C|589
*
4Y4O|1|2A|G|668
4Y4O|1|2A|G|669
4Y4O|1|2A|A|670
4Y4O|1|2A|C|671
*
4Y4O|1|2A|G|809
4Y4O|1|2A|U|810
4Y4O|1|2A|U|811
4Y4O|1|2A|C|812
*
4Y4O|1|2A|G|1195
4Y4O|1|2A|C|1196
*
4Y4O|1|2A|G|1250
4Y4O|1|2A|C|1251
4Y4O|1|2A|G|1252
4Y4O|1|2A|A|1253
4Y4O|1|2A|A|1254
4Y4O|1|2A|U|1255
4Y4O|1|2A|G|1256

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15

Chain 2U

50S ribosomal protein L20

Chain 2V

50S ribosomal protein L21