J5_4Y4O_014

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

4Y4O|1|2A|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_51422.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-F-F-F-tSS-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4Y4O|1|2A|C|601
4Y4O|1|2A|G|602
4Y4O|1|2A|A|603
4Y4O|1|2A|G|604
*
4Y4O|1|2A|C|624
4Y4O|1|2A|G|625
4Y4O|1|2A|U|626
4Y4O|1|2A|A|627
4Y4O|1|2A|G|628
*
4Y4O|1|2A|C|635
4Y4O|1|2A|G|636
4Y4O|1|2A|A|637
4Y4O|1|2A|G|638
*
4Y4O|1|2A|C|650
4Y4O|1|2A|G|651
4Y4O|1|2A|C|652
4Y4O|1|2A|A|652|||A
4Y4O|1|2A|A|652|||B
4Y4O|1|2A|G|652|||C
*
4Y4O|1|2A|C|652|||V
4Y4O|1|2A|A|653
4Y4O|1|2A|A|654
4Y4O|1|2A|A|655
4Y4O|1|2A|G|656

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15